2008

1. R. H. Castain, T. S. Woodall, D. J. Daniel, J. M. Squyres, B. Barrett, and G. E. Fagg. The Open Run-Time Environment (OpenRTE): A transparent multicluster environment for high-performance computing. Future Generation Computer Systems, 24(2):153--157, 2008. [bibtex-entry]



2. Douglas Gregor and Jaakko Järvi. Variadic Templates for C++0x. Journal of Object Technology, 7(2):31--51, February 2008. [bibtex-entry]

2007

1. Ronald Garcia, Jaakko Järvi, Andrew Lumsdaine, Jeremy Siek, and Jeremiah Willcock. An Extended Comparative Study of Language Support for Generic Programming. Journal of Functional Programming, 17(2):145--205, March 2007. [bibtex-entry]



2. Richard L. Graham, Brian W. Barrett, Galen M. Shipman, Timothy S. Woodall, and George Bosilca. Open MPI: A High Performance, Flexible Implementation of MPI Point-to-Point Communications. Parallel Processing Letters, 17(1):79--88, 2007 2007. [bibtex-entry]



3. Andrew Lumsdaine, Douglas Gregor, Bruce Hendrickson, and Jonathan Berry. Challenges in Parallel Graph Processing. Parallel Processing Letters, 17(1):5--20, 2007 2007. [bibtex-entry]

2006

1. Douglas Gregor and Sibylle Schupp. STLlint: Lifting static checking from languages to libraries. Software: Practice & Experience, 36:225--254, 2006. [Annotation] [bibtex-entry]



2. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. High-Performance Direct Pairwise Comparison of Large Genomic Sequences. IEEE Transactions on Parallel and Distributed Systems, Special Issue - High-Performance Computational Biology, 17(8):764-772, 2006. [bibtex-entry]

2005

1. Debasis Dan, Chris Mueller, Kun Chen, and James A. Glazier. Solving the advection-diffusion equations in biological contexts using the cellular Potts model. Phys. Rev. E, 72(041909), October 2005. [bibtex-entry]



2. Ronald Garcia and Andrew Lumsdaine. MultiArray: a C++ library for generic programming with arrays.. Softw., Pract. Exper., 35(2):159--188, 2005. [bibtex-entry]



3. Douglas Gregor, Jaakko Järvi, Mayuresh Kulkarni, Andrew Lumsdaine, David Musser, and Sibylle Schupp. Generic Programming and High-Performance Libraries. International Journal of Parallel Programming, 33(2), June 2005. [Annotation] [bibtex-entry]



4. T. Hoefler, R. Janisch, and W. Rehm. Improving the parallel scaling of ABINIT. pp 551-559, 12 2005. [bibtex-entry]



5. T. Hoefler, R. Janisch, and W. Rehm. A Performance Analysis of ABINIT on a Cluster System. pp 37-51, 12 2005. [bibtex-entry]



6. Lie-Quan Lee and Andrew Lumsdaine. Generic Programming for High Performance Scientific Applications. Concurrency and Computation: Practice & Experience, 17(7-8):941--965, June/July 2005. [bibtex-entry]



7. Ralf Müller, Peter Gottschling, and Martin Gaber. Water Concentration and Diffusivity in Silicates Obtained by Vacuum Extraction. Glass Science and Technology, 78:76--89, 2005. [bibtex-entry]



8. Sriram Sankaran, Jeffrey M. Squyres, Brian Barrett, Andrew Lumsdaine, Jason Duell, Paul Hargrove, and Eric Roman. The LAM/MPI Checkpoint/Restart Framework: System-Initiated Checkpointing. International Journal of High Performance Computing Applications, 19(4):479--493, Winter 2005.
   Keywords: MPI, checkpoint/restart, rollback-recovery. [bibtex-entry]



9. Jeffrey M. Squyres. Doing More With Less. ClusterWorld Magazine, MPI Mechanic Column, 3(6):32--34,50, June 2005.
   Keywords: MPI. [bibtex-entry]



10. Jeffrey M. Squyres. Why Are There So Many MPI Implementations?. ClusterWorld Magazine, MPI Mechanic Column, 3(4):32--35, April 2005.
    Keywords: MPI. [bibtex-entry]



11. Jeffrey M. Squyres. The Spawn of MPI. ClusterWorld Magazine, MPI Mechanic Column, 3(2):40--43, February 2005.
    Keywords: MPI. [bibtex-entry]



12. Jeffrey M. Squyres. Progress is the Opposite of Congress. ClusterWorld Magazine, MPI Mechanic Column, 3(5):32--35, May 2005.
    Keywords: MPI. [bibtex-entry]



13. Jeffrey M. Squyres. Is Your Application Spawnworthy?. ClusterWorld Magazine, MPI Mechanic Column, 3(3):32--33,46--47, March 2005.
    Keywords: MPI. [bibtex-entry]



14. Jeffrey M. Squyres. Debugging in Parallel (in Parallel). ClusterWorld Magazine, MPI Mechanic Column, 3(1):34--37, January 2005.
    Keywords: MPI. [bibtex-entry]



15. Jeremiah Willcock, Andrew Lumsdaine, and Arch Robison. Using MPI with C# and the Common Language Infrastructure. Concurrency and Computation: Practice & Experience, 17(7-8):895--917, June/July 2005. [bibtex-entry]

2004

1. Brian W. Barrett. Return of the MPI Datatypes. ClusterWorld Magazine, MPI Mechanic Column, 2(6):34--36, June 2004.
   Keywords: MPI. [bibtex-entry]



2. Jiangtao Cheng, J. P. Morris, John Tran, Andrew Lumsdaine, N. J. Giordano, and L. J. Pyrak-Nolte. Single Phase Flow in a Fracture: Micro-Model Experiments & Network Flow Simulation. International Journal of Rock Mechanics, 41(4):687--693, 2004. [bibtex-entry]



3. Jeffrey M. Squyres. The Joys of Asynchronous Computing. ClusterWorld Magazine, MPI Mechanic Column, 2(9):36--38, September 2004.
   Keywords: MPI. [bibtex-entry]



4. Jeffrey M. Squyres. How to Succeed in Datatypes Without Really Trying. ClusterWorld Magazine, MPI Mechanic Column, 2(5):32--34, May 2004.
   Keywords: MPI. [bibtex-entry]



5. Jeffrey M. Squyres. In Parallel, Everyone Hears You Scream II. ClusterWorld Magazine, MPI Mechanic Column, 2(8):34--36, August 2004.
   Keywords: MPI. [bibtex-entry]



6. Jeffrey M. Squyres. What Really Happens During MPI_INIT. ClusterWorld Magazine, MPI Mechanic Column, 2(2):26--28, 46, February 2004.
   Keywords: MPI b. [bibtex-entry]



7. Jeffrey M. Squyres. Everything You Wanted to Know About Groups and Communicators. ClusterWorld Magazine, MPI Mechanic Column, 2(4):32--34, 48, April 2004.
   Keywords: MPI. [bibtex-entry]



8. Jeffrey M. Squyres. More Joys of Asynchronous Communication. ClusterWorld Magazine, MPI Mechanic Column, 2(10):34--36, October 2004.
   Keywords: MPI. [bibtex-entry]



9. Jeffrey M. Squyres. In Parallel, Everyone Hears You Scream. ClusterWorld Magazine, MPI Mechanic Column, 2(7):36--37, July 2004.
   Keywords: MPI. [bibtex-entry]



10. Jeffrey M. Squyres. Processes, Processors, and MPI, Oh My!. ClusterWorld Magazine, MPI Mechanic Column, 2(1), January 2004.
    Keywords: MPI. [bibtex-entry]



11. Jeffrey M. Squyres. MPI Debugging -- Can You Hear Me Now?. ClusterWorld Magazine, MPI Mechanic Column, 2(12):32--35, December 2004.
    Keywords: MPI. [bibtex-entry]



12. Jeffrey M. Squyres. MPI_Reduce: Introducing Open MPI. ClusterWorld Magazine, 2(11):20--28, November 2004.
    Keywords: MPI. [bibtex-entry]



13. Jeffrey M. Squyres. Zen and the Art of MPI Collectives. ClusterWorld Magazine, MPI Mechanic Column, 2(3):32--34, March 2004.
    Keywords: MPI. [bibtex-entry]

2003

1. Daniel P. Friedman, Abdulaziz Ghuloum, Jeremy G. Siek, and Lynn Winebarger. Improving the Lazy Krivine Machine. Higher-Order and Symbolic Computation, 2003.
   Note: Accepted for publication. [bibtex-entry]



2. Douglas Gregor, Sibylle Schupp, and David R. Musser. Design Patterns for Library Optimization. Scientific Programming, 11(4):309--320, 2003. [bibtex-entry]



3. J. Järvi, G. Powell, and A. Lumsdaine. The Lambda Library: unnamed functions in C++. Software---Practice and Experience, 33:259--291, 2003. [bibtex-entry]



4. J. Järvi, J. Willcock, H. Hinnant, and A. Lumsdaine. Function Overloading Based on Arbitrary Properties of Types. C/C++ Users Journal, 21(6):25--32, June 2003. [bibtex-entry]



5. Andrew Lumsdaine and Deyun Wu. Krylov-Subspace Acceleration of Waveform Relaxation. SIAM Journal on Numerical Analysis, 41(1):90-111, 2003. [bibtex-entry]



6. Jeffrey M. Squyres. Definitions and Fundamentals -- The Message Passing Interface (MPI). ClusterWorld Magazine, MPI Mechanic Column, 1(1):26--29, December 2003.
   Keywords: MPI. [bibtex-entry]



7. Irina Virtanen, Eeva Ekholm, Tero Aittokallio, Jarno Tähtinen, Jussi Salmi, Jaakko Järvi, Päivi Polo-Kantola, and Olli Polo. State of vigilance, oestrogen replacement therapy, and libid profile as modifiers of nocturnal movement-induced heart rate responces. Clinical Physiology and Functional Imaging, 23(5):293--299, 2003. [bibtex-entry]

2002

1. L. Susan Blackford, James Demmel, Jack Dongarra, Iain Duff, Sven Hammarling, Michael Heroux, Linda Kaufman, Andrew Lumsdaine, Antone Petitet, Roldan Pozo, Karin Remington, and R. Clint Whaley. An updated set of basic linear algebra subprograms (BLAS). ACM Transactions on Mathematical Software (TOMS), 28(2):135--151, 2002. [bibtex-entry]



2. J. A. Izaguirre, Q. Ma, T. Matthey, J. Willcock, T. Slabach, B. Moore, and G. Viamontes. Overcoming Instabilities in Verlet-I/r-RESPA with the Mollified Impulse Method. In T. Schlick and H. H. Gan, editors,Proceedings of 3rd International Workshop on Methods for Macromolecular Modeling, volume 24 of Lecture Notes in Computational Science and Engineering, pages 146--174. Springer-Verlag, Berlin, New York, 2002. [bibtex-entry]



3. Ralf Müller, Martin Gaber, and Peter Gottschling. Water Release from Silicate Glass Powders. Glass Science and Technology, 75:92--97, 2002. [bibtex-entry]



4. Sibylle Schupp, Douglas Gregor, David R. Musser, and Shin-Ming Liu. Semantic and Behavioral Library Transformations. Information and Software Technology, 44(13):797--810, 2002. [bibtex-entry]

2001

1. J. Järvi. Tuple types and multiple return values. C/C++ Users Journal, 19:24--35, August 2001. [bibtex-entry]



2. Jeremy G. Siek and Andrew Lumsdaine. C++ Concept Checking. Dr. Dobb's Journal, June 2001. [bibtex-entry]



3. Anthony Skjellum, Diane G. Wooley, Ziyang Lu, Michael Wolf, Purushotham V. Bangalore, Andrew Lumsdaine, Jeffrey M. Squyres, and Brian McCandless. Object-oriented analysis and design of the Message Passing Interface. j-CCPE, 13(4):245--292, April 2001. [bibtex-entry]

2000

1. T. Aittokallio, M. Gyllenberg, J. Järvi, O. Nevalainen, and O. Polo. Detection of high-frequency respiratory movements during sleep. Computer Methods and Programs in Biomedicine, 61(3):171--185, 2000. [bibtex-entry]



2. Jeremy G. Siek and Andrew Lumsdaine. The Generic Graph Component Library. Dr. Dobb's Journal, September 2000. [bibtex-entry]



3. Jeremy G. Siek and Andrew Lumsdaine. Advances in Software Tools for Scientific Computing, chapter A Modern Framework for Portable High Performance Numerical Linear Algebra. Springer, 2000. [bibtex-entry]



4. Jeremy Siek and Andrew Lumsdaine. Software Engineering for Peak Performance. C++ Report, pp 23--27, May 2000. [bibtex-entry]

1999

1. J. Järvi. Object-Oriented Model for Partially Separable Functions in Parameter Estimation. Acta Cybernetica, 14(2):285--302, 1999. [bibtex-entry]



2. Jeremy G. Siek and Andrew Lumsdaine. The Matrix Template Library: Generic Components for High-performance Scientific Computing. Computing in Science and Engineering, 1(6):70--78, Nov/Dec 1999. [bibtex-entry]

1997

1. J. Järvi, S. Nyman, M. Komu, and J. J. Forsström. A PC-program for automatic analysis of NMR spectrum series. Computer Methods and Programs in Biomedicine, 52:213--222, 1997. [bibtex-entry]



2. Andrew Lumsdaine and Deyun Wu. Spectra and Pseudospectra of Block Toeplitz Matrices. Linear Algebra and its Applications, (272/01--03):103--130, 1997. [bibtex-entry]



3. Andrew Lumsdaine and Deyun Wu. Spectra and Pseudospectra of Waveform Relaxation Operators. SIAM J. Sci. Comput., 18(1):286--304, 1997. [bibtex-entry]

1996

1. Peter Gottschling and Peter-Wolfgang Gräber. Simulation of Stationary and Instationary Ground-Water Flow with a Parallel Hierarchical CG-Algorithm. SAMS, 25:127--144, 1996. [bibtex-entry]



2. Andrew Lumsdaine, Mark W. Reichelt, Jeffrey M. Squyres, and Jacob K. White. Accelerated Waveform Methods for Parallel Transient Simulation of Semiconductor Devices. IEEE Trans. CAD, 15(7):716--726, July 1996. [bibtex-entry]

1995

1. Peter Gottschling. Fast Sorting Algorithms on Parallel and Sequential Computers in Linear Time. Wissenschaftliche Beiträge zur Informatik, January 1995. [bibtex-entry]



2. Andrew Lumsdaine and Jacob K. White. Accelerating Dynamic Iteration Methods with Application to Parallel Semiconductor Device Simulation. Numerical Functional Anal. Optimization, 16:395--414, 1995. [bibtex-entry]

1994

1. Andrew Lumsdaine and Mark W. Reichelt. Decomposition of Space-Time Domains: Accelerated Waveform Methods, with Application to Semiconductor Device Simulation. In D. E. Keyes, Y. Saad, and D. G. Truhlar, editors,Domain-Based Parallelism and Problem Decomposition Methods in Computational Science and Engineering. SIAM, Philadelphia, 1994. [bibtex-entry]



2. Andrew Lumsdaine and Jacob K. White. Accelerating Dynamic Iteration Methods with Application to Semiconductor Device Simulation. In W. M. Coughran and others, editors,Semiconductors, volume 58-59 of IMA Volumes in Mathematics and its Applications. Springer-Verlag, New York, 1994. [bibtex-entry]

1993

1. Andrew Lumsdaine, L. Miguel Silveira, and Jacob White. Massively Parallel Simulation Algorithms for Grid-Based Analog Signal Processors. IEEE Trans. CAD, 12(11):1665--1678, November 1993. [bibtex-entry]

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