Thesis

1. Jeremy G. Siek. A Language for Generic Programming. PhD thesis, Indiana University, August 2005. [Annotation] [bibtex-entry]

Articles in journals or book chapters

1. Debasis Dan, Chris Mueller, Kun Chen, and James A. Glazier. Solving the advection-diffusion equations in biological contexts using the cellular Potts model. Phys. Rev. E, 72(041909), October 2005. [bibtex-entry]



2. Ronald Garcia and Andrew Lumsdaine. MultiArray: a C++ library for generic programming with arrays.. Softw., Pract. Exper., 35(2):159--188, 2005. [bibtex-entry]



3. Douglas Gregor, Jaakko Järvi, Mayuresh Kulkarni, Andrew Lumsdaine, David Musser, and Sibylle Schupp. Generic Programming and High-Performance Libraries. International Journal of Parallel Programming, 33(2), June 2005. [Annotation] [bibtex-entry]



4. T. Hoefler, R. Janisch, and W. Rehm. Improving the parallel scaling of ABINIT. pp 551-559, 12 2005. [bibtex-entry]



5. T. Hoefler, R. Janisch, and W. Rehm. A Performance Analysis of ABINIT on a Cluster System. pp 37-51, 12 2005. [bibtex-entry]



6. Lie-Quan Lee and Andrew Lumsdaine. Generic Programming for High Performance Scientific Applications. Concurrency and Computation: Practice & Experience, 17(7-8):941--965, June/July 2005. [bibtex-entry]



7. Ralf Müller, Peter Gottschling, and Martin Gaber. Water Concentration and Diffusivity in Silicates Obtained by Vacuum Extraction. Glass Science and Technology, 78:76--89, 2005. [bibtex-entry]



8. Sriram Sankaran, Jeffrey M. Squyres, Brian Barrett, Andrew Lumsdaine, Jason Duell, Paul Hargrove, and Eric Roman. The LAM/MPI Checkpoint/Restart Framework: System-Initiated Checkpointing. International Journal of High Performance Computing Applications, 19(4):479--493, Winter 2005.
   Keywords: MPI, checkpoint/restart, rollback-recovery. [bibtex-entry]



9. Jeffrey M. Squyres. Doing More With Less. ClusterWorld Magazine, MPI Mechanic Column, 3(6):32--34,50, June 2005.
   Keywords: MPI. [bibtex-entry]



10. Jeffrey M. Squyres. Progress is the Opposite of Congress. ClusterWorld Magazine, MPI Mechanic Column, 3(5):32--35, May 2005.
    Keywords: MPI. [bibtex-entry]



11. Jeffrey M. Squyres. Is Your Application Spawnworthy?. ClusterWorld Magazine, MPI Mechanic Column, 3(3):32--33,46--47, March 2005.
    Keywords: MPI. [bibtex-entry]



12. Jeffrey M. Squyres. Debugging in Parallel (in Parallel). ClusterWorld Magazine, MPI Mechanic Column, 3(1):34--37, January 2005.
    Keywords: MPI. [bibtex-entry]



13. Jeffrey M. Squyres. The Spawn of MPI. ClusterWorld Magazine, MPI Mechanic Column, 3(2):40--43, February 2005.
    Keywords: MPI. [bibtex-entry]



14. Jeffrey M. Squyres. Why Are There So Many MPI Implementations?. ClusterWorld Magazine, MPI Mechanic Column, 3(4):32--35, April 2005.
    Keywords: MPI. [bibtex-entry]



15. Jeremiah Willcock, Andrew Lumsdaine, and Arch Robison. Using MPI with C# and the Common Language Infrastructure. Concurrency and Computation: Practice & Experience, 17(7-8):895--917, June/July 2005. [bibtex-entry]

Conference articles

1. B. Barrett, J. M. Squyres, A. Lumsdaine, R. L. Graham, and G. Bosilca. Analysis of the Component Architecture Overhead in Open MPI. In Proceedings, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 2005. [bibtex-entry]



2. R. H. Castain, T. S. Woodall, D. J. Daniel, J. M. Squyres, B. Barrett, and G .E. Fagg. The Open Run-Time Environment (OpenRTE): A Transparent Multi-Cluster Environment for High-Performance Computing. In Proceedings, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 2005. [bibtex-entry]



3. Ronald Garcia and Andrew Lumsdaine. Type Classes Without Types. In 2005 Workshop on Scheme and Functional Programming, September 2005. [bibtex-entry]



4. Richard L. Graham, Timothy S. Woodall, and Jeffrey M. Squyres. Open MPI: A Flexible High Performance MPI. In Proceedings, 6th Annual International Conference on Parallel Processing and Applied Mathematics, Poznan, Poland, September 2005. [bibtex-entry]



5. Douglas Gregor and Andrew Lumsdaine. The Parallel BGL: A Generic Library for Distributed Graph Computations. In Parallel Object-Oriented Scientific Computing (POOSC), July 2005.
   Note: Accepted. [Annotation] [bibtex-entry]



6. Douglas Gregor and Andrew Lumsdaine. Lifting Sequential Graph Algorithms for Distributed-Memory Parallel Computation. In Proceedings of the 2005 ACM SIGPLAN conference on Object-oriented programming, systems, languages, and applications (OOPSLA '05), pages 423--437, October 2005. [Annotation] [bibtex-entry]



7. Douglas Gregor and Andrew Lumsdaine. The Execution Instance Overloading Pattern. In Workshop on Patterns in High-Performance Computing, May 2005. [bibtex-entry]



8. T. Hoefler, L. Cerquetti, T. Mehlan, F. Mietke, and W. Rehm. A practical approach to the rating of barrier algorithms using the LogP model and Open-MPI. In Proceedings of the 2005 International Conference on Parallel Processing Workshops, pages 562--569, 06 2005. [bibtex-entry]



9. T. Hoefler and W. Rehm. A Communication Model for Small Messages with InfiniBand. In PARS Mitteilungen, pages 32-41, 06 2005. PARS.
   Note: (Awarded with the PARS Junior Researcher Prize). [bibtex-entry]



10. Torsten Hoefler, Jeffrey M. Squyres, Torsten Mehlan, Frank Mietke, and Wolfgang Rehm. Implementing a Hardware-Based Barrier in Open MPI. In Proceedings of KiCC'05, Chemnitzer Informatik Berichte, November 2005. [bibtex-entry]



11. T. Hoefler. The Cell Processor. In 22C3 Proceedings, pages 286-292, 12 2005. [bibtex-entry]



12. Jaakko Järvi, Jeremiah Willcock, and Andrew Lumsdaine. Associated types and constraint propagation for mainstream object-oriented generics. In OOPSLA '05: Proceedings of the 20th annual ACM SIGPLAN conference on Object-oriented programming systems languages and applications, New York, NY, USA, pages 1--19, 2005. ACM Press. [bibtex-entry]



13. DongInn Kim, Jeffrey M. Squyres, and Andrew Lumsdaine. Revamping the OSCAR database: A Flexible Approach to Cluster Configuration Data Management. In Ilias Kotsireas and Deborah Stacey, editors, 19th International Symposium on High Performance Computing Systems and Applications, Guelph, Ontario, Canada, pages 326-332, May 2005. IEEE Computer Society.
    Keywords: OSCAR, high performance computing, cluster. [bibtex-entry]



14. F. Mietke, M. Steiger, T. Mehlan, and T. Hoefler und W. Rehm. SHIBA Shared Memory Support for InfiniBand MPICH2 Device. In PARS Mitteilungen 2005, pages 14-23, 6 2005. [bibtex-entry]



15. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. High-Performance Direct Pairwise Comparison of Large Genomic Sequences. In Proceedings of the Fourth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2005), April 2005. [bibtex-entry]



16. Craig E. Rasmussen and Jeffrey M. Squyres. A Case for New MPI Fortran Bindings. In Proceedings, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 2005. [bibtex-entry]



17. Jeremy Siek and Andrew Lumsdaine. Essential Language Support for Generic Programming. In PLDI '05: Proceedings of the ACM SIGPLAN 2005 conference on Programming language design and implementation, New York, NY, USA, pages 73--84, June 2005. ACM Press. [Annotation] [bibtex-entry]



18. Jeremy Siek and Andrew Lumsdaine. Language Requirements for Large-Scale Generic Libraries. In GPCE '05: Proceedings of the fourth international conference on Generative Programming and Component Engineering, September 2005.
    Note: Accepted for publication. [Annotation] [bibtex-entry]



19. Todd L. Veldhuizen. Software Libraries and Their Reuse: Entropy, Kolmogorov Complexity, and Zipf's Law. In , 2005.
    Note: ArXiv:cs.SE/0508023. [bibtex-entry]

Internal reports

1. Brian W. Barrett, Jeffrey M. Squyres, and Andrew Lumsdaine. Implementation of Open MPI on Red Storm. Technical report LA-UR-05-8307, Los Alamos National Laboratory, Los Alamos, New Mexico, USA, October 2005. [bibtex-entry]



2. Douglas Gregor, Jeremy Siek, Jeremiah Willcock, Jaakko Järvi, Ronald Garcia, and Andrew Lumsdaine. Concepts for C++0x (Revision 1). Technical report N1849=05-0109, ISO/IEC JTC 1, Information Technology, Subcommittee SC 22, Programming Language C++, August 2005. [bibtex-entry]



3. Douglas Gregor and Jeremy Siek. Explicit model definitions are necessary. Technical report N1798=05-0058, ISO/IEC JTC 1, Information Technology, Subcommittee SC 22, Programming Language C++, May 2005. [bibtex-entry]



4. Douglas Gregor and Jeremy Siek. Implementing Concepts. Technical report N1848=05-0108, ISO/IEC JTC 1, Information Technology, Subcommittee SC 22, Programming Language C++, August 2005. [bibtex-entry]



5. Jeremy Siek, Douglas Gregor, Ronald Garcia, Jeremiah Willcock, Jaakko Järvi, and Andrew Lumsdaine. Concepts for C++0x. Technical report N1758=05-0018, ISO/IEC JTC 1, Information Technology, Subcommittee SC 22, Programming Language C++, January 2005. [bibtex-entry]

Miscellaneous

1. Peter Gottschling. Generic Libraries to Support FEM Applications. Presentation at Extended Finite Element Tutorial, Lausanne, Switzerland, December 2005. [bibtex-entry]



2. Christopher Mueller, Mehmet Dalkilic, and Andrew Lumsdaine. Implementing Data Parallel Algorithms for Bioinformatics.
   Note: Presentation at SIAM Conference on Computational Science and Engineering, Orlando, FL, February 14 2005. [bibtex-entry]



3. Christopher Mueller and Andrew Lumsdaine. Developing Reliable Complex Software Systems in a Research Environment.
   Note: Presentation at iLight 2005, September 2005. [bibtex-entry]

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